Publications:
Google Scholar Link
Select publications from the lab:
2023
- Filipovic, W. Qi, O. Z. Kana, D. Marri, E. L. LeCluyse, M. E. Andersen, S. Cuddapah, and S. Bhattacharya, Predictive Models of Genome-Wide Aryl Hydrocarbon Receptor DNA Binding Reveal Tissue Specific Binding Determinants. Toxicological Sciences kfad094.
- O. Z. Kana, R. Nault, D. Filipovic, D. Marri, T. Zacharewski and S. Bhattacharya, Generative Modeling of Single Cell Gene Expression for Dose-Dependent Chemical Perturbations. Patterns 4(8): 100817.
- Marri, D. Filipovic, O. Z. Kana, S. Tischkau and S. Bhattacharya, Prediction of mammalian tissue-specific CLOCK-BMAL1 binding to E-box motifs. Scientific Reports 30: 7742.
2022
- Y. Yang, D. Filipovic and S. Bhattacharya, A Negative Feedback Loop and Transcription Factor Cooperation Regulate Zonal Gene Induction by 2, 3, 7, 8-Tetrachlorodibenzo-p-Dioxin in the Mouse Liver. Hepatology Communications 6(4): 750.
2020
- N. Josyula, M. E. Andersen, N. E. Kaminski, E. Dere, T. R. Zacharewski and S. Bhattacharya, Gene co-regulation and co-expression in the aryl hydrocarbon receptor-mediated transcriptional regulatory network in the mouse liver. Archives of Toxicology 94, 113–126 (2020).
Lab News:
9/1/23
Dr. David Filipovic’s paper accepted in Toxicol Sci. Congratulations!
8/11/23
Congratulations to Dr. Omar Kana and the team on our new publication in Patterns: Generative modeling of single-cell gene expression for dose-dependent chemical perturbations
7/25/23
Sudin promoted to Associate Professor with tenure.
6/20/23
Congratulations to Dr. Omar Kana on successfully defending his thesis!
5/5/23
Congratulations Drs. David Filipovic and Omar Kana!
4/25/23
BME PhD candidate Daniel Marri’s manuscript, Prediction of mammalian tissue-specific CLOCK-BMAL1 binding to E-box motifs,” accepted for publication in Scientific Reports. Congratulations Daniel!
12/8/22
Congratulations to Dr. David Filipovic on successfully defending his thesis!
2/1/21
Congratulations to BME PhD candidate David Filipovic for winning the 2021 Best Abstract Award from the Computational Toxicology Specialty Section and the Perry Gehring Award from the Biological Modeling Specialty Section of the Society of Toxicology!
11/14/19
Our new article, “Gene co-regulation and co-expression in the aryl hydrocarbon receptor-mediated transcriptional regulatory network in the mouse liver”, published in Archives of Toxicology.
3/19/18
Our open review of “Frank SA. A biochemical logarithmic sensor with broad dynamic range“, in F1000 Research.
3/12/18
Sudin wins the Young Investigator Award from the Association of Scientists of Indian Origin at the Society of Toxicology 2018 Annual Meeting.
3/7/18
David Filipovic wins MSU Graduate School Travel Fellowship to attend the Society of Toxicology 2018 Annual Meeting. Congratulations David!
2/6/18
Our preprint on analysis of the AHR transcriptional network in mouse liver is online at bioRxiv.
1/25/18
Sudin to speak on “Integrative Modeling of the Aryl Hydrocarbon Receptor Pathway” Wed Jan 31 in the Pharmacology & Toxicology Seminar Series at Wright State University Boonshoft School of Medicine.
1/20/18
Wenjie Qi wins MSU Superfund Trainee Travel Award to attend Midwest Chromatin and Epigenetics Meeting at Purdue in June 2018. Congratulations Wenjie!
10/11/17
Our paper with Jinpeng Li and MSU Kaminski Lab is online at J Imm.
10/10/17
Bhattacharya Lab alum Kelsey Gasior’s paper on EMT is online at Theor. Biol. Med. Mod.